A. Doms, and M. Schroeder. Nucleic Acids Research, 33 (Web Server issue):
W783--W786(July 2005)PMID: 15980585
PMCID: 1160231.
DOI: 10.1093/nar/gki470
Abstract
The biomedical literature grows at a tremendous rate and PubMed comprises already over 15 000 000 abstracts. Finding relevant literature is an important and difficult problem. We introduce GoPubMed, a web server which allows users to explore PubMed search results with the Gene Ontology (GO), a hierarchically structured vocabulary for molecular biology. GoPubMed provides the following benefits: first, it gives an overview of the literature abstracts by categorizing abstracts according to the GO and thus allowing users to quickly navigate through the abstracts by category. Second, it automatically shows general ontology terms related to the original query, which often do not even appear directly in the abstract. Third, it enables users to verify its classification because GO terms are highlighted in the abstracts and as each term is labelled with an accuracy percentage. Fourth, exploring PubMed abstracts with GoPubMed is useful as it shows definitions of GO terms without the need for further look up. GoPubMed is online at . Querying is currently limited to 100 papers per query.
%0 Journal Article
%1 doms_gopubmed:_2005
%A Doms, Andreas
%A Schroeder, Michael
%D 2005
%J Nucleic Acids Research
%K alternative, interface, pubmed
%N Web Server issue
%P W783--W786
%R 10.1093/nar/gki470
%T GoPubMed: exploring PubMed with the Gene Ontology
%V 33
%X The biomedical literature grows at a tremendous rate and PubMed comprises already over 15 000 000 abstracts. Finding relevant literature is an important and difficult problem. We introduce GoPubMed, a web server which allows users to explore PubMed search results with the Gene Ontology (GO), a hierarchically structured vocabulary for molecular biology. GoPubMed provides the following benefits: first, it gives an overview of the literature abstracts by categorizing abstracts according to the GO and thus allowing users to quickly navigate through the abstracts by category. Second, it automatically shows general ontology terms related to the original query, which often do not even appear directly in the abstract. Third, it enables users to verify its classification because GO terms are highlighted in the abstracts and as each term is labelled with an accuracy percentage. Fourth, exploring PubMed abstracts with GoPubMed is useful as it shows definitions of GO terms without the need for further look up. GoPubMed is online at . Querying is currently limited to 100 papers per query.
@article{doms_gopubmed:_2005,
abstract = {The biomedical literature grows at a tremendous rate and {PubMed} comprises already over 15 000 000 abstracts. Finding relevant literature is an important and difficult problem. We introduce {GoPubMed,} a web server which allows users to explore {PubMed} search results with the Gene Ontology {(GO),} a hierarchically structured vocabulary for molecular biology. {GoPubMed} provides the following benefits: first, it gives an overview of the literature abstracts by categorizing abstracts according to the {GO} and thus allowing users to quickly navigate through the abstracts by category. Second, it automatically shows general ontology terms related to the original query, which often do not even appear directly in the abstract. Third, it enables users to verify its classification because {GO} terms are highlighted in the abstracts and as each term is labelled with an accuracy percentage. Fourth, exploring {PubMed} abstracts with {GoPubMed} is useful as it shows definitions of {GO} terms without the need for further look up. {GoPubMed} is online at . Querying is currently limited to 100 papers per query.},
added-at = {2011-03-24T16:45:37.000+0100},
author = {Doms, Andreas and Schroeder, Michael},
biburl = {https://www.bibsonomy.org/bibtex/2c36b700a621c4f96909e023df6b99040/boudry},
doi = {10.1093/nar/gki470},
interhash = {ede77029ab0af6a88de781cda6b15d6b},
intrahash = {c36b700a621c4f96909e023df6b99040},
issn = {0305-1048},
journal = {Nucleic Acids Research},
keywords = {alternative, interface, pubmed},
month = jul,
note = {{PMID:} 15980585
{PMCID:} 1160231},
number = {Web Server issue},
pages = {W783--W786},
shorttitle = {{GoPubMed}},
timestamp = {2011-03-24T16:45:38.000+0100},
title = {{GoPubMed:} exploring {PubMed} with the Gene Ontology},
volume = 33,
year = 2005
}