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Estimating Cellular Goals from High-Dimensional Biological Data., , , , and . KDD, page 2202-2211. ACM, (2019)Positively charged mineral surfaces promoted the accumulation of organic intermediates at the origin of metabolism., and . PLoS Comput. Biol., (2022)Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli., , , , and . PLoS Comput. Biol., (2019)A Multi-scale Computational Platform to Mechanistically Assess the Effect of Genetic Variation on Drug Responses in Human Erythrocyte Metabolism., , , and . PLoS Comput. Biol., (2016)A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory., , and . BMC Syst. Biol., (2008)Omic data from evolved E. coli are consistent with computed optimal growth from genome‐scale models, , , , , , , , , and 5 other author(s). Molecular Systems Biology, 6 (1): 390+ (Jan 1, 2010)Theory for the Systemic Definition of Metabolic Pathways and their use in Interpreting Metabolic Function from a Pathway-Oriented Perspective, , and . Journal of Theoretical Biology, 203 (3): 229 - 248 (2000)Constraining the metabolic genotype--phenotype relationship using a phylogeny of in silico methods, , and . Nat Rev Micro, 10 (4): 291--305 (Apr 27, 2012)Pharmacogenomic and clinical data link non-pharmacokinetic metabolic dysregulation to drug side effect pathogenesis, , , , , , , and . Nature Communications, (Jun 9, 2015)Towards genome-scale signalling network reconstructions., and . Nature reviews. Genetics, 11 (4): 297--307 (Apr 23, 2010)