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Characterizing the Relationship between Steady State and Response Using Analytical Expressions for the Steady States of Mass Action Models., , and . PLoS Comput. Biol., (2013)Mapping single molecule sequencing reads using Basic Local Alignment with Successive Refinement (BLASR): Theory and Application., and . BMC Bioinform., (2012)QUAST: quality assessment tool for genome assemblies., , , and . Bioinform., 29 (8): 1072-1075 (2013)GRIMM: genome rearrangements web server.. Bioinform., 18 (3): 492-493 (2002)Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly., , , , , and . J. Comput. Biol., 20 (4): 359-371 (2013)Decoding the Genomic Architecture of Mammalian and Plant Genomes: Synteny Blocks and Large-scale Duplications., , , and . Commun. Inf. Syst., 10 (1): 1-22 (2010)Distribution of Segment Lengths in Genome Rearrangements.. Electr. J. Comb., (2008)Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers., , , , and . J. Comput. Biol., 18 (11): 1625-1634 (2011)Preface., and . J. Comput. Biol., 15 (8): 943-946 (2008)Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products., , , , , , , , , and 8 other author(s). J. Comput. Biol., 20 (10): 714-737 (2013)