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Incorporation of gene exchangeabilities improves the reproducibility of gene set rankings., and . Comput. Stat. Data Anal., (2014)Integrative analysis of gene expression and copy number alterations using canonical correlation analysis., , , and . BMC Bioinform., (2010)The projection score - an evaluation criterion for variable subset selection in PCA visualization., and . BMC Bioinform., (2011)A comparison of methods for differential expression analysis of RNA-seq data., and . BMC Bioinform., (2013)Integrative analysis of gene expression and copy number alterations using canonical correlation analysis, , , and . BMC Bioinformatics, 11 (1): 191 (2010)Towards unified quality verification of synthetic count data with countsimQC., and . Bioinform., 34 (4): 691-692 (2018)compcodeR - an R package for benchmarking differential expression methods for RNA-seq data.. Bioinform., 30 (17): 2517-2518 (2014)Preprocessing choices affect RNA velocity results for droplet scRNA-seq data., , , and . PLoS Comput. Biol., (2021)TreeSummarizedExperiment: a S4 class for data with hierarchical structure., , , , , , and . F1000Research, (2020)Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification., , and . F1000Research, (2018)