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Fulgor: a fast and compact k-mer index for large-scale matching and color queries., , , , and . Algorithms Mol. Biol., 19 (1): 3 (December 2024)Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification., , and . F1000Research, (2018)Rich Chromatin Structure Prediction from Hi-C Data., and . IEEE ACM Trans. Comput. Biol. Bioinform., 16 (5): 1448-1458 (2019)PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index., , and . Bioinform., 37 (22): 4048-4055 (November 2021)Fast, Parallel, and Cache-Friendly Suffix Array Construction., , , , and . WABI, volume 273 of LIPIcs, page 16:1-16:21. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, (2023)Spectrum Preserving Tilings Enable Sparse and Modular Reference Indexing., , , and . RECOMB, volume 13976 of Lecture Notes in Computer Science, page 21-40. Springer, (2023)Cuttlefish: fast, parallel and low-memory compaction of de Bruijn graphs from large-scale genome collections., and . Bioinform., 37 (Supplement): 177-186 (2021)An incrementally updatable and scalable system for large-scale sequence search using the Bentley-Saxe transformation., , , , , , and . Bioinform., 38 (12): 3155-3163 (2022)Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data., , , , and . Bioinform., 36 (Supplement-1): i102-i110 (2020)Perplexity: Evaluating Transcript Abundance Estimation in the Absence of Ground Truth., , and . WABI, volume 201 of LIPIcs, page 4:1-4:22. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, (2021)