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Local deformations of polymers with nonplanar rigid main-chain internal coordinates.. J. Comput. Chem., 21 (13): 1132-1144 (2000)Dynamic coupling between coordinates in a model for biomolecular isomerization, , and . The Journal of Chemical Physics, (2006)Predicting rare events using neural networks and short-trajectory data., , , and . J. Comput. Phys., (September 2023)Improved Statistical Methods Enable Greater Sensitivity in Rhythm Detection for Genome-Wide Data., , , , , , , and . PLoS Comput. Biol., (2015)An incoherent regulatory network architecture that orchestrates B cell diversification in response to antigen signaling, , , , , and . Molecular Systems Biology, (May 24, 2011)CHARMM: The biomolecular simulation program., , , , , , , , , and 25 other author(s). J. Comput. Chem., 30 (10): 1545-1614 (2009)Pervasive, conserved secondary structure in highly charged protein regions., , , and . PLoS Comput. Biol., (October 2023)Error Bounds for Dynamical Spectral Estimation., , , , and . SIAM J. Math. Data Sci., 3 (1): 225-252 (2021)Discovering transcription factor regulatory targets using gene expression and binding data., , , , and . Bioinform., 28 (2): 206-213 (2012)Flow-Dependent Unfolding and Refolding of an RNA by Nonequilibrium Umbrella Sampling, , , , and . Journal of Chemical Theory and Computation, 7 (9): 2710-2720 (2011)PMID: 26605464.