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Local deformations of polymers with nonplanar rigid main-chain internal coordinates.. J. Comput. Chem., 21 (13): 1132-1144 (2000)Dynamic coupling between coordinates in a model for biomolecular isomerization, , and . The Journal of Chemical Physics, (2006)Predicting rare events using neural networks and short-trajectory data., , , and . J. Comput. Phys., (September 2023)CHARMM: The biomolecular simulation program., , , , , , , , , and 25 other author(s). J. Comput. Chem., 30 (10): 1545-1614 (2009)An incoherent regulatory network architecture that orchestrates B cell diversification in response to antigen signaling, , , , , and . Molecular Systems Biology, (May 24, 2011)Improved Statistical Methods Enable Greater Sensitivity in Rhythm Detection for Genome-Wide Data., , , , , , , and . PLoS Comput. Biol., (2015)Pervasive, conserved secondary structure in highly charged protein regions., , , and . PLoS Comput. Biol., (October 2023)Error Bounds for Dynamical Spectral Estimation., , , , and . SIAM J. Math. Data Sci., 3 (1): 225-252 (2021)Separating forward and backward pathways in nonequilibrium umbrella sampling, , and . Journal of Chemical Physics, (2009)Umbrella sampling for nonequilibrium processes, , and . The Journal of Chemical Physics, 127 (15): 154112-- (October 2007)