This protocol provides detailed instructions on Quality Control, EWAS, and CpG island signature discovery with Illumina Infinitum MethylationEPIC and Infinium Human Methylation 450K BeadChip data. R package minfi and caret was used in this analysis.
E. Zangerle, C. Bauer, and A. Said. Proceedings of the Fifteenth ACM Conference on Recommender Systems, page 794-795. New York, NY, USA, ACM, (September 2021)