This protocol provides detailed instructions on Quality Control, EWAS, and CpG island signature discovery with Illumina Infinitum MethylationEPIC and Infinium Human Methylation 450K BeadChip data. R package minfi and caret was used in this analysis.
M. Rao, K. Swamy, K.Anithasheela, and B. Mohan. International Journal of Computer Science, Engineering and Information Technology (IJCSEIT), 2 (1):
67-74(February 2012)